| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| 1_non_mutant_Q96_K97del_6mth_10_03_2016_S1_fem_R1.fastq.gz | 45,249,907 | 0 | 150-150 | 46 |
| 1-MORGAN-6P-PN1_S2_R1_001.fastq.gz | 26,302,897 | 0 | 76-76 | 44 |
| 11__-_5_R1.fq.gz | 21,273,771 | 0 | 35-76 | 45 |
| 12__-_4_R1.fq.gz | 22,071,800 | 0 | 35-76 | 45 |
| 13__-_3_R1.fq.gz | 1.7e+07 | 0 | 35-76 | 45 |
| 14__-_2_R1.fq.gz | 24,270,286 | 0 | 35-76 | 45 |
| 15__-_1_R1.fq.gz | 25,647,352 | 0 | 35-76 | 45 |
| 2_non_mutant_Q96_K97del_6mth_10_03_2016_S2_fem_R1.fastq.gz | 39,114,762 | 0 | 150-150 | 45 |
| 2-MORGAN-6P-PN2_S5_R1_001.fastq.gz | 45,259,313 | 0 | 76-76 | 44 |
| 3_non_mutant_Q96_K97del_6mth_10_03_2016_S3_fem_R1.fastq.gz | 42,797,663 | 0 | 150-150 | 45 |
| 3-MORGAN-6P-PN3_S10_R1_001.fastq.gz | 29,287,775 | 0 | 76-76 | 44 |
| 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz | 46,369,672 | 0 | 150-150 | 44 |
| 4-MORGAN-6P-PN4_S8_R1_001.fastq.gz | 32,052,087 | 0 | 76-76 | 43 |
| 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz | 39,006,553 | 0 | 101-101 | 43 |
| 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz | 83,077,374 | 0 | 150-150 | 44 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_79_Fem_R1.fastq.gz | 27,979,654 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_86_Fem_R1.fastq.gz | 32,642,121 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_88_Fem_R1.fastq.gz | 34,587,957 | 0 | 150-150 | 48 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_95_Fem_R1.fastq.gz | 32,013,598 | 0 | 150-150 | 46 |
| W1_1.fq.gz | 46,329,465 | 0 | 150-150 | 43 |
| W1_2.fq.gz | 46,329,465 | 0 | 150-150 | 44 |
| W2_1.fq.gz | 44,097,195 | 0 | 150-150 | 44 |
| W2_2.fq.gz | 44,097,195 | 0 | 150-150 | 44 |
| W3_1.fq.gz | 45,464,120 | 0 | 150-150 | 43 |
| W3_2.fq.gz | 45,464,120 | 0 | 150-150 | 44 |
| W4_1.fq.gz | 53,931,526 | 0 | 150-150 | 43 |
| W4_2.fq.gz | 53,931,526 | 0 | 150-150 | 44 |
| W5_1.fq.gz | 41,480,106 | 0 | 150-150 | 43 |
| W5_2.fq.gz | 41,480,106 | 0 | 150-150 | 43 |
Library Sizes ranged between 17,004,294 and 83,077,374 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Hsapiens Genome
GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Genome
Total overrepresented sequences for each library
## Overrepresented_sequences missing from 1-MORGAN-6P-PN1_S2_R1_001.fastq.gz
## Overrepresented_sequences missing from 11__-_5_R1.fq.gz
## Overrepresented_sequences missing from 12__-_4_R1.fq.gz
## Overrepresented_sequences missing from 13__-_3_R1.fq.gz
## Overrepresented_sequences missing from 14__-_2_R1.fq.gz
## Overrepresented_sequences missing from 15__-_1_R1.fq.gz
## Overrepresented_sequences missing from 2-MORGAN-6P-PN2_S5_R1_001.fastq.gz
## Overrepresented_sequences missing from 3-MORGAN-6P-PN3_S10_R1_001.fastq.gz
## Overrepresented_sequences missing from 4-MORGAN-6P-PN4_S8_R1_001.fastq.gz
## Overrepresented_sequences missing from W1_1.fq.gz
## Overrepresented_sequences missing from W1_2.fq.gz
## Overrepresented_sequences missing from W2_1.fq.gz
## Overrepresented_sequences missing from W2_2.fq.gz
## Overrepresented_sequences missing from W3_1.fq.gz
## Overrepresented_sequences missing from W3_2.fq.gz
## Overrepresented_sequences missing from W4_1.fq.gz
## Overrepresented_sequences missing from W4_2.fq.gz
## Overrepresented_sequences missing from W5_1.fq.gz
## Overrepresented_sequences missing from W5_2.fq.gz
| Sequence | Total | Present In | Overall Percentage | Max_Percentage | Possible_Source |
|---|---|---|---|---|---|
| CCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCC | 1,981,001 | 10 | 0.176% | 0.68% | No Hit |
| CGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCC | 1,705,784 | 6 | 0.151% | 0.67% | No Hit |
| GTGGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGC | 1,478,805 | 4 | 0.131% | 1.72% | No Hit |
| GGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATC | 1,213,039 | 4 | 0.107% | 1.09% | No Hit |
| CTGAAGTCTTGGAGCTCGACTTCCCTACGTTTCGCCTACAAATGTTGCCT | 900,121 | 6 | 0.080% | 0.36% | No Hit |
| GGGGTGTACGAAGCTGAACTTTTATTCATCTCCCAGACAACCAGCTATTG | 751,501 | 4 | 0.067% | 1.07% | No Hit |
| GGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCAT | 662,397 | 4 | 0.059% | 0.78% | No Hit |
| GTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATCT | 646,200 | 4 | 0.057% | 0.56% | No Hit |
| CTTAGACGACCTGGTAGTCCAAGGCTCCCCCAGGAGCACCATATCGATAC | 516,132 | 7 | 0.046% | 0.27% | No Hit |
| CCTCCTTCAAGTATTGTTTCATGTTACATTTTCGTATATTCTGGGGTAGA | 465,262 | 4 | 0.041% | 0.58% | No Hit |
| CTCCTGAAAAGGTTGTATCCTTTGTTAAAGGGGCTGTACCCTCTTTAACT | 439,796 | 3 | 0.039% | 0.69% | No Hit |
| GGGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTT | 421,995 | 3 | 0.037% | 0.62% | No Hit |
| CGGGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGG | 417,361 | 4 | 0.037% | 0.73% | No Hit |
| GCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCA | 392,887 | 6 | 0.035% | 0.15% | No Hit |
| GTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTA | 379,000 | 6 | 0.034% | 0.15% | No Hit |
| GGGTGTACGAAGCTGAACTTTTATTCATCTCCCAGACAACCAGCTATTGC | 351,669 | 4 | 0.031% | 0.43% | No Hit |
| CGGGTCGGGTGGGTAGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGG | 346,616 | 4 | 0.031% | 0.57% | No Hit |
| CCCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATC | 317,427 | 4 | 0.028% | 0.39% | No Hit |
| CTCCGACCTGGGCCGGTTCACCCCTCCTTAGACGACCTGGTAGTCCAAGG | 244,650 | 4 | 0.022% | 0.12% | No Hit |
| ATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACT | 202,097 | 3 | 0.018% | 0.13% | No Hit |
| GGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTTA | 189,815 | 2 | 0.017% | 0.37% | No Hit |
| AGCTGGGGAGATCCGCGAGAAGGGCCCGGCGCACGTCCAGAGTCGCCGCC | 177,147 | 3 | 0.016% | 0.23% | No Hit |
| GGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGGAC | 172,979 | 3 | 0.015% | 0.25% | No Hit |
| GGTGTACGAAGCTGAACTTTTATTCATCTCCCAGACAACCAGCTATTGCC | 172,617 | 4 | 0.015% | 0.20% | No Hit |
| GTCCCCCACTACCAGAAATTATGCAGTCGAGATTCCCACATTTGGGGAAT | 165,358 | 3 | 0.015% | 0.19% | No Hit |
| GTCTGAAGTCTTGGAGCTCGACTTCCCTACGTTTCGCCTACAAATGTTGC | 161,482 | 3 | 0.014% | 0.24% | No Hit |
| GGCCCGGCGCACGTCCAGAGTCGCCGCCGCGCACCGCAGCGCATCCCCCC | 159,243 | 2 | 0.014% | 0.36% | No Hit |
| GCCCACTACGACAACGTGTTTTGTAAATTATGATCTTTATTCTCCTGAAA | 154,577 | 2 | 0.014% | 0.24% | No Hit |
| GCTCGGGTGTCTACATCCATTCCTACAGTGAATATGTGATGGGCTCATAC | 146,042 | 3 | 0.013% | 0.20% | No Hit |
| GGCCCACTACGACAACGTGTTTTGTAAATTATGATCTTTATTCTCCTGAA | 133,144 | 2 | 0.012% | 0.22% | No Hit |
Universal Adapter Content
## Kmer_Content missing from 11__-_5_R1.fq.gz
## Kmer_Content missing from 12__-_4_R1.fq.gz
## Kmer_Content missing from 13__-_3_R1.fq.gz
## Kmer_Content missing from 14__-_2_R1.fq.gz
## Kmer_Content missing from 15__-_1_R1.fq.gz
## Kmer_Content missing from W1_1.fq.gz
## Kmer_Content missing from W1_2.fq.gz
## Kmer_Content missing from W2_1.fq.gz
## Kmer_Content missing from W2_2.fq.gz
## Kmer_Content missing from W3_1.fq.gz
## Kmer_Content missing from W3_2.fq.gz
## Kmer_Content missing from W4_1.fq.gz
## Kmer_Content missing from W4_2.fq.gz
## Kmer_Content missing from W5_1.fq.gz
## Kmer_Content missing from W5_2.fq.gz
| Sequence | Max_Obs/Exp_Position | Total Abundance | Present In |
|---|---|---|---|
| TACTCAG | 9 | 711,780 | 6 |
| TCTTGGA | 7 | 438,295 | 6 |
| AGTCTTG | 5 | 431,595 | 6 |
| TTGGAGC | 9 | 427,330 | 6 |
| GAAGTCT | 3 | 418,095 | 6 |
| CCGCTGT | 1 | 396,830 | 6 |
| GTCTTGG | 6 | 395,470 | 6 |
| CTGAAGT | 1 | 443,565 | 5 |
| GGGTTCA | 3 | 389,235 | 4 |
| TGAAGTC | 2 | 361,460 | 4 |
| CTTGGAG | 8 | 353,990 | 4 |
| GTGGGTT | 1 | 317,480 | 4 |
| TGGGTTC | 2 | 280,610 | 4 |
| GTCGGGT | 4 | 205,980 | 4 |
| GGGTCGG | 2 | 184,535 | 4 |
| CGGGTCG | 1 | 139,940 | 4 |
| CGCGGGT | 68 | 33,745 | 4 |
| AACGCCG | 55 | 31,180 | 4 |
| TAACGCC | 54 | 30,900 | 4 |
| CGCCGGA | 60 | 30,835 | 4 |
| GGATCGC | 64 | 30,815 | 4 |
| CGGATCG | 63 | 29,330 | 4 |
| CCGGAAC | 1 | 29,035 | 4 |
| TCGCGGG | 67 | 28,615 | 4 |
| CGGAACC | 2 | 27,460 | 4 |
| GATCGCG | 65 | 27,035 | 4 |
| ATCGCGG | 66 | 26,935 | 4 |
| TTACTCA | 9 | 491,075 | 3 |
| CTGTATT | 4 | 480,420 | 3 |
| TATTACT | 7 | 454,685 | 3 |